recipe bioconductor-ularcirc

Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Homepage

https://bioconductor.org/packages/3.12/bioc/html/Ularcirc.html

License

file LICENSE

Recipe

/bioconductor-ularcirc/meta.yaml

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

package bioconductor-ularcirc

Versions

1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-annotationdbi >=1.52.0,<1.53.0

• bioconductor-annotationhub >=2.22.0,<2.23.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-bsgenome >=1.58.0,<1.59.0

• bioconductor-genomeinfodb >=1.26.0,<1.27.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-mirbase.db >=1.2.0,<1.3.0

• bioconductor-organism.dplyr >=1.18.0,<1.19.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-sushi >=1.28.0,<1.29.0

• r-base >=4.0,<4.1.0a0

• r-data.table >=1.9.4

• r-dt

• r-ggplot2

• r-ggrepel

• r-gsubfn

• r-moments

• r-shiny

• r-shinydashboard

• r-shinyfiles

• r-shinyjs

• r-yaml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ularcirc

and update with:

conda update bioconductor-ularcirc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ularcirc:<tag>

(see bioconductor-ularcirc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ularcirc/README.html)