- recipe bioconductor-ularcirc
Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/Ularcirc.html
- License
file LICENSE
- Recipe
Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.
- package bioconductor-ularcirc¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomeinfodbdata
>=1.2.0,<1.3.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-mirbase.db
>=1.2.0,<1.3.0
bioconductor-organism.dplyr
>=1.22.0,<1.23.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-sushi
>=1.31.0,<1.32.0
r-base
>=4.1,<4.2.0a0
r-data.table
>=1.9.4
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ularcirc
and update with:
conda update bioconductor-ularcirc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ularcirc:<tag>
(see bioconductor-ularcirc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ularcirc/README.html)