recipe bioconductor-undo

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Homepage

https://bioconductor.org/packages/3.14/bioc/html/UNDO.html

License

GPL-2

Recipe

/bioconductor-undo/meta.yaml

Links

biotools: undo, doi: 10.1093/bioinformatics/btu607

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

package bioconductor-undo

Versions

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0, 

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• r-base >=4.1,<4.2.0a0

• r-boot

• r-mass

• r-nnls

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-undo

and update with:

conda update bioconductor-undo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-undo:<tag>

(see bioconductor-undo/tags for valid values for <tag>)

Download stats

Link to this page

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