recipe bioconductor-undo

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/UNDO.html

License

GPL-2

Recipe

/bioconductor-undo/meta.yaml

Links

biotools: undo, doi: 10.1093/bioinformatics/btu607

package bioconductor-undo

(downloads) docker_bioconductor-undo

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-boot

Depends r-mass

Depends r-nnls

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-undo

and update with:

conda update bioconductor-undo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-undo:<tag>

(see bioconductor-undo/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-undo/README.html)