recipe bioconductor-undo

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Homepage

https://bioconductor.org/packages/3.11/bioc/html/UNDO.html

License

GPL-2

Recipe

/bioconductor-undo/meta.yaml

Links

biotools: undo, doi: 10.1093/bioinformatics/btu607

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

package bioconductor-undo

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• r-base >=4.0,<4.1.0a0

• r-boot

• r-mass

• r-nnls

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-undo

and update with:

conda update bioconductor-undo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-undo:<tag>

(see bioconductor-undo/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-undo/README.html)