- recipe bioconductor-universalmotif
Import, Modify, and Export Motifs with R
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/universalmotif.html
- License:
GPL-3
- Recipe:
Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others.
- package bioconductor-universalmotif¶
-
- Versions:
1.12.3-0
,1.12.1-0
,1.10.1-0
,1.8.3-0
,1.8.0-0
,1.6.3-0
,1.4.0-0
,1.2.1-0
,1.0.12-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-universalmotif
and update with:
conda update bioconductor-universalmotif
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-universalmotif:<tag>
(see bioconductor-universalmotif/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-universalmotif/README.html)