recipe bioconductor-universalmotif

Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/universalmotif.html

License

GPL-3

Recipe

/bioconductor-universalmotif/meta.yaml

package bioconductor-universalmotif

Versions

1.2.1-0, 1.0.12-0

Depends

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-biostrings >=2.52.0,<2.53.0

• bioconductor-ggtree >=1.16.0,<1.17.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-ape

• r-base >=3.6,<3.7.0a0

• r-ggplot2

• r-ggseqlogo

• r-gtools

• r-processx

• r-rcpp

• r-rdpack >=0.7

• r-yaml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-universalmotif

and update with:

conda update bioconductor-universalmotif

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-universalmotif:<tag>

(see bioconductor-universalmotif/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-universalmotif/README.html)