recipe bioconductor-universalmotif

Import, Modify, and Export Motifs with R

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/universalmotif.html

License:

GPL-3

Recipe:

/bioconductor-universalmotif/meta.yaml

Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others.

package bioconductor-universalmotif

Versions:

1.12.3-0,  1.12.1-0,  1.10.1-0,  1.8.3-0,  1.8.0-0,  1.6.3-0,  1.4.0-0,  1.2.1-0,  1.0.12-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-mass

• r-rcpp

• r-rcppthread

• r-rlang

• r-yaml

Required By:

• bioconductor-memes

• bioconductor-circrnaprofiler

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-universalmotif

and update with:

conda update bioconductor-universalmotif

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-universalmotif:<tag>

(see bioconductor-universalmotif/tags for valid values for <tag>)

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Link to this page

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