recipe bioconductor-universalmotif

Import, Modify, and Export Motifs with R

Homepage

https://bioconductor.org/packages/3.11/bioc/html/universalmotif.html

License

GPL-3

Recipe

/bioconductor-universalmotif/meta.yaml

Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others.

package bioconductor-universalmotif

Versions

1.6.3-0,  1.4.0-0,  1.2.1-0,  1.0.12-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-ggtree >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.5.0

• r-ape

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-ggseqlogo

• r-mass

• r-processx

• r-rcpp

• r-rcppthread

• r-rdpack >=0.7

• r-rlang

• r-yaml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-universalmotif

and update with:

conda update bioconductor-universalmotif

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-universalmotif:<tag>

(see bioconductor-universalmotif/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-universalmotif/README.html)