recipe bioconductor-usort

uSORT: A self-refining ordering pipeline for gene selection

Homepage

https://bioconductor.org/packages/3.11/bioc/html/uSORT.html

License

Artistic-2.0

Recipe

/bioconductor-usort/meta.yaml

This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.

package bioconductor-usort

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-monocle >=2.16.0,<2.17.0

• r-base >=4.0,<4.1.0a0

• r-cluster

• r-fpc

• r-gplots

• r-igraph

• r-matrix

• r-plyr

• r-rann

• r-rspectra

• r-vgam

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-usort

and update with:

conda update bioconductor-usort

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-usort:<tag>

(see bioconductor-usort/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-usort/README.html)