recipe bioconductor-usort

uSORT: A self-refining ordering pipeline for gene selection

Homepage

https://bioconductor.org/packages/3.14/bioc/html/uSORT.html

License

Artistic-2.0

Recipe

/bioconductor-usort/meta.yaml

This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.

package bioconductor-usort

Versions

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-monocle >=2.22.0,<2.23.0

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-fpc

• r-gplots

• r-igraph

• r-matrix

• r-plyr

• r-rann

• r-rspectra

• r-vgam

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-usort

and update with:

conda update bioconductor-usort

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-usort:<tag>

(see bioconductor-usort/tags for valid values for <tag>)

Download stats

Link to this page

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