-
recipe
bioconductor-variantfiltering¶ Filter genetic variants using different criteria such as inheritance model, amino acid change consequence, minor allele frequencies across human populations, splice site strength, conservation, etc.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/VariantFiltering.html
- License
Artistic-2.0
- Recipe
- Links
biotools: variantfiltering, doi: 10.1038/nmeth.3252
-
package
bioconductor-variantfiltering¶ 
- Versions
1.20.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-0
- Depends
bioconductor-annotationdbi >=1.46.0,<1.47.0
bioconductor-biobase >=2.44.0,<2.45.0
bioconductor-biocgenerics >=0.30.0,<0.31.0
bioconductor-biocparallel >=1.18.0,<1.19.0
bioconductor-biostrings >=2.52.0,<2.53.0
bioconductor-bsgenome >=1.52.0,<1.53.0
bioconductor-genomeinfodb >=1.20.0,<1.21.0
bioconductor-genomicfeatures >=1.36.0,<1.37.0
bioconductor-genomicranges >=1.36.0,<1.37.0
bioconductor-genomicscores >=1.8.0,<1.9.0
bioconductor-graph >=1.62.0,<1.63.0
bioconductor-gviz >=1.28.0,<1.29.0
bioconductor-iranges >=2.18.0,<2.19.0
bioconductor-rbgl >=1.60.0,<1.61.0
bioconductor-rsamtools >=2.0.0,<2.1.0
bioconductor-s4vectors >=0.22.0,<0.23.0
bioconductor-summarizedexperiment >=1.14.0,<1.15.0
bioconductor-variantannotation >=1.30.0,<1.31.0
bioconductor-xvector >=0.24.0,<0.25.0
libgcc-ng >=7.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-variantfiltering
and update with:
conda update bioconductor-variantfiltering
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-variantfiltering:<tag>
(see bioconductor-variantfiltering/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-variantfiltering/README.html)