-
recipe
bioconductor-vegamc¶ This package enables the detection of driver chromosomal imbalances including loss of heterozygosity (LOH) from array comparative genomic hybridization (aCGH) data. VegaMC performs a joint segmentation of a dataset and uses a statistical framework to distinguish between driver and passenger mutation. VegaMC has been implemented so that it can be immediately integrated with the output produced by PennCNV tool. In addition, VegaMC produces in output two web pages that allows a rapid navigation between both the detected regions and the altered genes. In the web page that summarizes the altered genes, the link to the respective Ensembl gene web page is reported.
- Homepage
- License
GPL-2
- Recipe
- Links
biotools: vegamc, doi: 10.1093/bioinformatics/bts453
-
package
bioconductor-vegamc¶ 
- Versions
3.22.0-1, 3.20.0-0, 3.18.0-0, 3.16.0-0
- Depends
bioconductor-biobase >=2.44.0,<2.45.0
bioconductor-biomart >=2.40.0,<2.41.0
bioconductor-genoset >=1.40.0,<1.41.0
libgcc-ng >=7.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-vegamc
and update with:
conda update bioconductor-vegamc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-vegamc:<tag>
(see bioconductor-vegamc/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-vegamc/README.html)