recipe bioconductor-vidger

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/vidger.html

License

GPL-3 | file LICENSE

Recipe

/bioconductor-vidger/meta.yaml

package bioconductor-vidger

(downloads) docker_bioconductor-vidger

Versions

1.2.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggally

Depends r-ggplot2

Depends r-ggrepel

Depends r-knitr

Depends r-rcolorbrewer

Depends r-rmarkdown

Depends r-scales

Depends r-tidyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-vidger

and update with:

conda update bioconductor-vidger

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vidger:<tag>

(see bioconductor-vidger/tags for valid values for <tag>)