recipe bioconductor-viper

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Homepage

https://bioconductor.org/packages/3.9/bioc/html/viper.html

License

file LICENSE

Recipe

/bioconductor-viper/meta.yaml

Links

biotools: viper

package bioconductor-viper

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• r-base >=3.5.1,<3.5.2.0a0

• r-e1071

• r-kernsmooth

• r-mixtools

Required By

• bioconductor-aracne.networks

• bioconductor-rtnsurvival

• bioconductor-rtn

• bioconductor-vulcan

• bioconductor-diggit

• bioconductor-diggitdata

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-viper

and update with:

conda update bioconductor-viper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-viper:<tag>

(see bioconductor-viper/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-viper/README.html)