recipe bioconductor-viper

Virtual Inference of Protein-activity by Enriched Regulon analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/viper.html

License

file LICENSE

Recipe

/bioconductor-viper/meta.yaml

Links

biotools: viper

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

package bioconductor-viper

Versions

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.16.0-0,  1.14.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-e1071

• r-kernsmooth

• r-mixtools

Required By

• bioconductor-aracne.networks

• bioconductor-dorothea

• bioconductor-rtn

• bioconductor-vulcan

• bioconductor-diggit

• bioconductor-diggitdata

• bioconductor-decoupler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-viper

and update with:

conda update bioconductor-viper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-viper:<tag>

(see bioconductor-viper/tags for valid values for <tag>)

Download stats

Link to this page

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