recipe bioconductor-visse

Visualising Set Enrichment Analysis Results

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/vissE.html

License:

GPL-3

Recipe:

/bioconductor-visse/meta.yaml

This package enables the interpretation and analysis of results from a gene set enrichment analysis using network-based and text-mining approaches. Most enrichment analyses result in large lists of significant gene sets that are difficult to interpret. Tools in this package help build a similarity-based network of significant gene sets from a gene set enrichment analysis that can then be investigated for their biological function using text-mining approaches.

package bioconductor-visse

Versions:

1.6.0-0,  1.2.2-0,  1.0.0-0

Depends:

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-msigdb >=1.6.0,<1.7.0

• r-base >=4.2,<4.3.0a0

• r-ggforce

• r-ggplot2

• r-ggraph

• r-ggrepel

• r-ggwordcloud

• r-igraph

• r-plyr

• r-rcolorbrewer

• r-reshape2

• r-scales

• r-scico

• r-textstem

• r-tidygraph

• r-tm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-visse

and update with:

conda update bioconductor-visse

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-visse:<tag>

(see bioconductor-visse/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-visse/README.html)