recipe bioconductor-voyager

From geospatial to spatial omics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Voyager.html

License:

Artistic-2.0

Recipe:

/bioconductor-voyager/meta.yaml

SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. The voyager package implements basic exploratory spatial data analysis (ESDA) methods for SFE. This first version supports univariate global spatial ESDA methods such as Moran's I, permutation testing for Moran's I, and correlograms. The Voyager package also implements plotting functions to plot SFE data and ESDA results. Multivariate ESDA and univariate local metrics will be added in later versions.

package bioconductor-voyager

Versions:

1.0.3-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-bluster >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• bioconductor-spatialfeatureexperiment >=1.0.0,<1.1.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggnewscale

• r-ggplot2

• r-matrix

• r-patchwork

• r-rlang

• r-scales

• r-scico

• r-sf

• r-spdep

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-voyager

and update with:

conda update bioconductor-voyager

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-voyager:<tag>

(see bioconductor-voyager/tags for valid values for <tag>)

Download stats

Link to this page

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