recipe bioconductor-vplotr

Set of tools to make V-plots and compute footprint profiles

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/VplotR.html

License:

GPL-3

Recipe:

/bioconductor-vplotr/meta.yaml

The pattern of digestion and protection from DNA nucleases such as DNAse I, micrococcal nuclease, and Tn5 transposase can be used to infer the location of associated proteins. This package contains useful functions to analyze patterns of paired-end sequencing fragment density. VplotR facilitates the generation of V-plots and footprint profiles over single or aggregated genomic loci of interest.

package bioconductor-vplotr

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-ggplot2

• r-magrittr

• r-rcolorbrewer

• r-reshape2

• r-zoo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-vplotr

and update with:

conda update bioconductor-vplotr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vplotr:<tag>

(see bioconductor-vplotr/tags for valid values for <tag>)

Download stats

Link to this page

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