- recipe bioconductor-vplotr
Set of tools to make V-plots and compute footprint profiles
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/VplotR.html
- License:
GPL-3
- Recipe:
The pattern of digestion and protection from DNA nucleases such as DNAse I, micrococcal nuclease, and Tn5 transposase can be used to infer the location of associated proteins. This package contains useful functions to analyze patterns of paired-end sequencing fragment density. VplotR facilitates the generation of V-plots and footprint profiles over single or aggregated genomic loci of interest.
- package bioconductor-vplotr¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-vplotr
and update with:
conda update bioconductor-vplotr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-vplotr:<tag>
(see bioconductor-vplotr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-vplotr/README.html)