recipe bioconductor-vulcan

Vulcan (VirtUaL ChIP-Seq Analysis through Networks) is a package that interrogates gene regulatory networks to infer cofactors significantly enriched in a differential binding signature coming from ChIP-Seq data. In order to do so, our package combines strategies from different BioConductor packages: DESeq for data normalization, ChIPpeakAnno and DiffBind for annotation and definition of ChIP-Seq genomic peaks, csaw to define optimal peak width and viper for applying a regulatory network over a differential binding signature.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/vulcan.html

License

LGPL-3

Recipe

/bioconductor-vulcan/meta.yaml

package bioconductor-vulcan

(downloads) docker_bioconductor-vulcan

Versions

1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-vulcan

and update with:

conda update bioconductor-vulcan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vulcan:<tag>

(see bioconductor-vulcan/tags for valid values for <tag>)