recipe bioconductor-wiggleplotr

Make read coverage plots from BigWig files

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/wiggleplotr.html

License:

Apache License 2.0

Recipe:

/bioconductor-wiggleplotr/meta.yaml

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

package bioconductor-wiggleplotr

versions:

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0, 

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.1-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-genomeinfodb:

>=1.42.0,<1.43.0

depends bioconductor-genomicranges:

>=1.58.0,<1.59.0

depends bioconductor-iranges:

>=2.40.0,<2.41.0

depends bioconductor-rtracklayer:

>=1.66.0,<1.67.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends r-assertthat:

depends r-base:

>=4.4,<4.5.0a0

depends r-cowplot:

depends r-dplyr:

depends r-ggplot2:

>=2.2.0

depends r-purrr:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-wiggleplotr

and update with::

   mamba update bioconductor-wiggleplotr

To create a new environment, run:

mamba create --name myenvname bioconductor-wiggleplotr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-wiggleplotr:<tag>

(see `bioconductor-wiggleplotr/tags`_ for valid values for ``<tag>``)

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