- recipe bioconductor-wiggleplotr
Make read coverage plots from BigWig files
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/wiggleplotr.html
- License:
Apache License 2.0
- Recipe:
Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.
- package bioconductor-wiggleplotr¶
-
- Versions:
1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.1-0
,1.8.0-1
,1.6.0-0
,1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.1-0
,1.8.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
r-ggplot2
>=2.2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-wiggleplotr
and update with:
conda update bioconductor-wiggleplotr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-wiggleplotr:<tag>
(see bioconductor-wiggleplotr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-wiggleplotr/README.html)