recipe bioconductor-wiggleplotr

Make read coverage plots from BigWig files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/wiggleplotr.html

License:

Apache License 2.0

Recipe:

/bioconductor-wiggleplotr/meta.yaml

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

package bioconductor-wiggleplotr

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.1-0,  1.8.0-1,  1.6.0-0, 

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.1-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-assertthat

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-dplyr

• r-ggplot2 >=2.2.0

• r-purrr

Required By:

• bioconductor-factr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-wiggleplotr

and update with:

conda update bioconductor-wiggleplotr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-wiggleplotr:<tag>

(see bioconductor-wiggleplotr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-wiggleplotr/README.html)