recipe bioconductor-wpm

Well Plate Maker

Homepage

https://bioconductor.org/packages/3.14/bioc/html/wpm.html

License

Artistic-2.0

Recipe

/bioconductor-wpm/meta.yaml

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

package bioconductor-wpm

Versions

1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cli

• r-config

• r-dplyr

• r-dt

• r-ggplot2

• r-golem

• r-logging

• r-rcolorbrewer

• r-rlang

• r-shiny

• r-shinycustomloader

• r-shinydashboard

• r-shinywidgets

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-wpm

and update with:

conda update bioconductor-wpm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-wpm:<tag>

(see bioconductor-wpm/tags for valid values for <tag>)

Download stats

Link to this page

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