recipe bioconductor-wppi

Weighting protein-protein interactions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/wppi.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-wppi/meta.yaml

Protein-protein interaction data is essential for omics data analysis and modeling. Database knowledge is general, not specific for cell type, physiological condition or any other context determining which connections are functional and contribute to the signaling. Functional annotations such as Gene Ontology and Human Phenotype Ontology might help to evaluate the relevance of interactions. This package predicts functional relevance of protein-protein interactions based on functional annotations such as Human Protein Ontology and Gene Ontology, and prioritizes genes based on network topology, functional scores and a path search algorithm.

package bioconductor-wppi

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-omnipathr >=3.5.0,<3.6.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-igraph

• r-logger

• r-magrittr

• r-matrix

• r-progress

• r-purrr

• r-rcurl

• r-rlang

• r-tibble

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-wppi

and update with:

conda update bioconductor-wppi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-wppi:<tag>

(see bioconductor-wppi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-wppi/README.html)