recipe bioconductor-xde

Multi-level model for cross-study detection of differential gene expression.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/XDE.html

License

LGPL-2

Recipe

/bioconductor-xde/meta.yaml

Links

biotools: xde

package bioconductor-xde

(downloads) docker_bioconductor-xde

Versions

2.28.0-0, 2.26.0-0, 2.24.0-0, 2.22.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-genemeta

>=1.54.0,<1.55.0

Depends bioconductor-mergemaid

>=2.54.0,<2.55.0

Depends bioconductor-siggenes

>=1.56.0,<1.57.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-gtools

Depends r-mvtnorm

Depends r-rcolorbrewer

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-xde

and update with:

conda update bioconductor-xde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xde:<tag>

(see bioconductor-xde/tags for valid values for <tag>)