recipe bioconductor-xnastring

Efficient Manipulation of Modified Oligonucleotide Sequences

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/XNAString.html

License:

GPL-2

Recipe:

/bioconductor-xnastring/meta.yaml

The XNAString package allows for description of base sequences and associated chemical modifications in a single object. XNAString is able to capture single stranded, as well as double stranded molecules. Chemical modifications are represented as independent strings associated with different features of the molecules (base sequence, sugar sequence, backbone sequence, modifications) and can be read or written to a HELM notation. It also enables secondary structure prediction using RNAfold from ViennaRNA. XNAString is designed to be efficient representation of nucleic-acid based therapeutics, therefore it stores information about target sequences and provides interface for matching and alignment functions from Biostrings package.

package bioconductor-xnastring

Versions:

1.6.0-0,  1.2.2-1,  1.2.2-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-formattable

• r-future.apply

• r-rcpp

• r-stringi

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-xnastring

and update with:

conda update bioconductor-xnastring

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xnastring:<tag>

(see bioconductor-xnastring/tags for valid values for <tag>)

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