recipe bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.html

License:

Artistic-2.0

Recipe:

/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

package bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37

Versions:

0.99.12-10,  0.99.12-9,  0.99.12-8,  0.99.12-7,  0.99.12-6,  0.99.12-5,  0.99.12-4,  0.99.12-3,  0.99.12-2, 

0.99.12-10,  0.99.12-9,  0.99.12-8,  0.99.12-7,  0.99.12-6,  0.99.12-5,  0.99.12-4,  0.99.12-3,  0.99.12-2,  0.99.12-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221103

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-appreci8r

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37

and update with:

conda update bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37:<tag>

(see bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/tags for valid values for <tag>)

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