recipe bioconductor-xvector

Foundation of external vector representation and manipulation in Bioconductor

Homepage

https://bioconductor.org/packages/3.13/bioc/html/XVector.html

License

Artistic-2.0

Recipe

/bioconductor-xvector/meta.yaml

Links

biotools: xvector, doi: 10.1038/nmeth.3252

Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).

package bioconductor-xvector

Versions

0.32.0-0,  0.30.0-1,  0.30.0-0,  0.28.0-0,  0.26.0-0,  0.24.0-1,  0.22.0-0,  0.20.0-0,  0.18.0-0, 

0.32.0-0,  0.30.0-1,  0.30.0-0,  0.28.0-0,  0.26.0-0,  0.24.0-1,  0.22.0-0,  0.20.0-0,  0.18.0-0,  0.16.0-0,  0.14.1-0,  0.12.1-0,  0.10.0-1,  0.10.0-0,  0.8.0-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-zlibbioc >=1.38.0,<1.39.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-structstrings

• bioconductor-variantfiltering

• bioconductor-genomicranges

• bioconductor-kebabs

• bioconductor-rsamtools

• bioconductor-gviz

• bioconductor-tfbstools

• bioconductor-r453plus1toolbox

• bioconductor-hilda

• bioconductor-shortread

• bioconductor-biostrings

• bioconductor-variantannotation

• bioconductor-isoformswitchanalyzer

• bioconductor-rtracklayer

• bioconductor-genomicfeatures

• bioconductor-chipsim

• bioconductor-trna

• bioconductor-decipher

• bioconductor-ribosomeprofilingqc

• bioconductor-tracktables

• bioconductor-trnascanimport

• bioconductor-triplex

• bioconductor-ioniser

• bioconductor-gcrma

• bioconductor-dada2

• bioconductor-cner

• bioconductor-modstrings

• bioconductor-compepitools

• bioconductor-matrixrider

• bioconductor-bsgenome

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-xvector

and update with:

conda update bioconductor-xvector

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xvector:<tag>

(see bioconductor-xvector/tags for valid values for <tag>)

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