recipe bioconductor-zellkonverter

Conversion Between scRNA-seq Objects

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/zellkonverter.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-zellkonverter/meta.yaml

Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.

package bioconductor-zellkonverter

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.3-0,  1.0.0-0

Depends:

• bioconductor-basilisk >=1.9.0,<1.10.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-cli

• r-matrix

• r-reticulate

Required By:

• bioconductor-velociraptor

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-zellkonverter

and update with:

conda update bioconductor-zellkonverter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-zellkonverter:<tag>

(see bioconductor-zellkonverter/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-zellkonverter/README.html)