- recipe bioconductor-zellkonverter
Conversion Between scRNA-seq Objects
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/zellkonverter.html
- License:
MIT + file LICENSE
- Recipe:
Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.
- package bioconductor-zellkonverter¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.3-0
,1.0.0-0
- Depends:
bioconductor-basilisk
>=1.9.0,<1.10.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-zellkonverter
and update with:
conda update bioconductor-zellkonverter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-zellkonverter:<tag>
(see bioconductor-zellkonverter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-zellkonverter/README.html)