recipe bioconductor-zenith

Gene set analysis following differential expression using linear (mixed) modeling with dream

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/zenith.html

License:

Artistic-2.0

Recipe:

/bioconductor-zenith/meta.yaml

Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. This package implements the camera method from the limma package proposed by Wu and Smyth (2012). Zenith is a simple extension of camera to be compatible with linear mixed models implemented in variancePartition::dream().

package bioconductor-zenith

Versions:

1.0.0-0

Depends:

• bioconductor-enrichmentbrowser >=2.28.0,<2.29.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-variancepartition >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-msigdbr >=7.5.1

• r-progress

• r-rdpack

• r-reshape2

• r-rfast

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-zenith

and update with:

conda update bioconductor-zenith

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-zenith:<tag>

(see bioconductor-zenith/tags for valid values for <tag>)

Download stats

Link to this page

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