recipe bioconductor-zfpkm

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/zFPKM.html

License

GPL-3 | file LICENSE

Recipe

/bioconductor-zfpkm/meta.yaml

package bioconductor-zfpkm

(downloads) docker_bioconductor-zfpkm

Versions

1.4.0-0, 1.2.0-0, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-zfpkm

and update with:

conda update bioconductor-zfpkm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-zfpkm:<tag>

(see bioconductor-zfpkm/tags for valid values for <tag>)