bismark

downloads

Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.

Home https://www.bioinformatics.babraham.ac.uk/projects/bismark/
Versions 0.17.0, 0.18.1
License GNU General Public License v3 (GPLv3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bismark

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bismark

and update with:

conda update bismark

docker

A Docker container is available at https://quay.io/repository/biocontainers/bismark.