recipe blobtoolkit

Interactive quality assessment of genome assemblies.

Homepage:

https://github.com/blobtoolkit/blobtoolkit

Documentation:

https://blobtoolkit.genomehubs.org

License:

MIT / MIT

Recipe:

/blobtoolkit/meta.yaml

Links:

doi: 10.1534/g3.119.400908, biotools: BlobToolKit, usegalaxy-eu: blobtoolkit, usegalaxy-eu: interactive_tool_blobtoolkit

package blobtoolkit

versions:

4.4.6-0

depends blobtk:

>=0.7.1

depends chromedriver-autoinstaller:

>=0.6.2

depends docopt:

>=0.6.2

depends firefox:

depends geckodriver:

depends psutil:

5.9.4

depends python:

>=3.9,<3.14

depends python-fastjsonschema:

2.21.1

depends pyvirtualdisplay:

3.0

depends pyyaml:

depends selenium:

>=4.10.0

depends tolkein:

>=0.5.0

depends tqdm:

4.64.1

depends ujson:

>=5.7.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install blobtoolkit

and update with::

   mamba update blobtoolkit

To create a new environment, run:

mamba create --name myenvname blobtoolkit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/blobtoolkit:<tag>

(see `blobtoolkit/tags`_ for valid values for ``<tag>``)

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