recipe blockclust

Efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.

Homepage

https://github.com/pavanvidem/blockclust

License

GPL

Recipe

/blockclust/meta.yaml

Links

doi: 10.1093/bioinformatics/btu270

package blockclust

(downloads) docker_blockclust

Versions

1.1.0-4, 1.1.0-3, 1.1.0-2, 1.1.0-1, 1.1.0-0

Depends cloudpickle

0.5.6.*

Depends eden

1.1.*

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends mcl

>=14.137

Depends pysam

>=0.15.0

Depends python

>=2.7,<2.8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dendextend

>=1.8.0

Depends scikit-learn

>=0.20.0

Depends wget

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install blockclust

and update with:

conda update blockclust

or use the docker container:

docker pull quay.io/biocontainers/blockclust:<tag>

(see blockclust/tags for valid values for <tag>)