recipe bloocoo

Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory.

Homepage

http://gatb.inria.fr/software/bloocoo/

License

aGPL v3

Recipe

/bloocoo/meta.yaml

package bloocoo

(downloads) docker_bloocoo

Versions

1.0.7-1, 1.0.7-0

Depends libgcc-ng

>=4.9

Depends libstdcxx-ng

>=4.9

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bloocoo

and update with:

conda update bloocoo

or use the docker container:

docker pull quay.io/biocontainers/bloocoo:<tag>

(see bloocoo/tags for valid values for <tag>)