- recipe bmtagger
BMTagger aka Best Match Tagger is for removing human reads from metagenomics datasets
- Homepage
- License
Public Domain
- Recipe
- package bmtagger¶
-
- Versions
3.101-5
,3.101-4
,3.101-3
,3.101-1
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bmtagger
and update with:
conda update bmtagger
or use the docker container:
docker pull quay.io/biocontainers/bmtagger:<tag>
(see bmtagger/tags for valid values for
<tag>
)
Notes¶
You may find it necessary to create a bmtagger.conf file to specify paired or single-end searching. The file should contain the line 'srprismopts="-b 100000000 -n 5 -R 0 -r 1 -M 7168"' along with '-p true' or '-p false' for paired, and single, respectively. This config file can be passed to bmtagger.sh via the '-C' option.
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Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bmtagger/README.html)