bmtagger¶
BMTagger aka Best Match Tagger is for removing human reads from metagenomics datasets
| Home | ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/ |
| Versions | 3.101 |
| License | Public Domain |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bmtagger |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bmtagger
and update with:
conda update bmtagger
Notes¶
You may find it necessary to create a bmtagger.conf file to specify paired or single-end searching. The file should contain the line ‘srprismopts=”-b 100000000 -n 5 -R 0 -r 1 -M 7168”’ along with ‘-p true’ or ‘-p false’ for paired, and single, respectively. This config file can be passed to bmtagger.sh via the ‘-C’ option.
A Docker container is available at https://quay.io/repository/biocontainers/bmtagger.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bmtagger/README.html)
