recipe bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Homepage

https://github.com/jenniferlu717/Bracken

License

GPL-3.0

Recipe

/bracken/meta.yaml

Links

biotools: Bracken, doi: 10.7717/peerj-cs.104

package bracken

(downloads) docker_bracken

Versions

2.5-2, 2.5-1, 2.5-0, 2.2-1, 2.2-0, 1.0.0-1, 1.0.0-0

Depends
  • kraken2

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • python >=2.7,<2.8.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bracken

and update with:

conda update bracken

or use the docker container:

docker pull quay.io/biocontainers/bracken:<tag>

(see bracken/tags for valid values for <tag>)