recipe braker2

BRAKER2 is an extension of BRAKER1 which allows for fully automated training of the gene prediction tools GeneMark-EX and AUGUSTUS from RNA-Seq and/or protein homology information, and that integrates the extrinsic evidence from RNA-Seq and protein homology information into the prediction.

Homepage

https://github.com/Gaius-Augustus/BRAKER

License

Other / Artistic License

Recipe

/braker2/meta.yaml

Links

doi: 10.13140/RG.2.2.12857.62564

package braker2

(downloads) docker_braker2

Versions

2.1.2-2, 2.1.2-1, 2.1.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install braker2

and update with:

conda update braker2

or use the docker container:

docker pull quay.io/biocontainers/braker2:<tag>

(see braker2/tags for valid values for <tag>)

Notes

  • GeneMark software can be used for free, but requires a license file and should be additionally installed on the machine where the BRAKER2 environment is.

  • GenomeThreader software can be used for free, but all warranties are excluded and thus the user should additionally install it on the machine where the BRAKER2 environment is.