recipe breakseq2

BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants.

Homepage

http://bioinform.github.io/breakseq2

License

BSD-2-Clause

Recipe

/breakseq2/meta.yaml

package breakseq2

Versions

2.2-2, 2.2-1, 2.2-0

Depends

• biopython 1.65

• bwa

• cython

• pysam 0.7.7

• python >=2.7,<2.8.0a0

• samtools 0.1.19

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install breakseq2

and update with:

conda update breakseq2

or use the docker container:

docker pull quay.io/biocontainers/breakseq2:<tag>

(see breakseq2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/breakseq2/README.html)