recipe breseq

A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.

Homepage

https://github.com/barricklab/breseq

License

GPL / GPL-3.0

Recipe

/breseq/meta.yaml

package breseq

(downloads) docker_breseq

Versions

0.33.0-0, 0.31.1-3, 0.31.1-2, 0.31.1-1, 0.29.0-0

Depends
  • bowtie2 >=2.0.0,!=2.0.3,!=2.0.4,!=2.3.1

  • libgcc-ng >=4.9

  • r-base

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install breseq

and update with:

conda update breseq

or use the docker container:

docker pull quay.io/biocontainers/breseq:<tag>

(see breseq/tags for valid values for <tag>)