recipe brockman-pipeline

Brockman Representation Of Chromatin by K-mers in Mark-Associated Nucleotides

Homepage

https://github.com/Carldeboer/Brockman

License

GPL-3.0

Recipe

/brockman-pipeline/meta.yaml

package brockman-pipeline

(downloads) docker_brockman-pipeline

Versions

1.0-2, 1.0-1, 1.0-0

Depends amused

Depends bedtools

Depends bowtie2

Depends bzip2

Depends jemalloc

Depends ncurses

Depends ruby

>=2.4

Depends ruby-dna-tools

Depends samtools

Depends trimmomatic

Depends ucsc-twobittofa

Depends zlib

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install brockman-pipeline

and update with:

conda update brockman-pipeline

or use the docker container:

docker pull quay.io/biocontainers/brockman-pipeline:<tag>

(see brockman-pipeline/tags for valid values for <tag>)