recipe busco

Assessment of assembly completeness using Universal Single Copy Orthologs

Homepage:

http://busco.ezlab.org/

License:

MIT

Recipe:

/busco/meta.yaml

Links:

biotools: busco, doi: 10.1093/bioinformatics/btv351, usegalaxy-eu: busco

BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.

package busco

Versions:

5.4.7-0,  5.4.6-0,  5.4.5-0,  5.4.4-0,  5.4.3-0,  5.4.2-0,  5.4.1-0,  5.4.0-2,  5.4.0-1, 

5.4.7-0,  5.4.6-0,  5.4.5-0,  5.4.4-0,  5.4.3-0,  5.4.2-0,  5.4.1-0,  5.4.0-2,  5.4.0-1,  5.4.0-0,  5.3.2-0,  5.3.1-0,  5.3.0-0,  5.2.2-0,  5.2.1-0,  5.2.0-0,  5.1.3-0,  5.1.2-0,  5.1.1-1,  5.1.1-0,  5.1.0-1,  5.1.0-0,  5.0.0-1,  5.0.0-0,  4.1.4-2,  4.1.4-1,  4.1.4-0,  4.1.3-0,  4.1.2-3,  4.1.2-2,  4.1.2-1,  4.1.2-0,  4.1.1-0,  4.0.6-0,  4.0.5-0,  4.0.4-1,  4.0.4-0,  4.0.2-0,  4.0.1-0,  4.0.0-0,  4.0.beta1-0,  3.0.2-13,  3.0.2-12,  3.0.2-11,  3.0.2-10,  3.0.2-9,  3.0.2-8,  3.0.2-7,  3.0.2-6,  3.0.2-5,  3.0.2-4,  3.0.1-0,  2.0.1-0,  2.0-0,  1.2-1,  1.2-0

Depends:

• augustus >=3.3

• bbmap

• biopython

• blast >=2.10.1

• dendropy <4.6.0

• fonts-conda-ecosystem

• hmmer >=3.1b2

• metaeuk >=6.a5d39d9

• pandas

• prodigal

• python >=3.3

• r-base

• r-ggplot2 >=2.2.1

• sepp >=4.3.10

• wget

Required By:

• rnaquast

• purge_dups

• hapsolo

• guessmylt

• dammit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install busco

and update with:

conda update busco

or use the docker container:

docker pull quay.io/biocontainers/busco:<tag>

(see busco/tags for valid values for <tag>)

Download stats

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