recipe bwakit

A self-consistent installation-free package of scripts and precompiled binaries, providing an end-to-end solution to read mapping

Homepage:

https://github.com/lh3/bwa/tree/master/bwakit

License:

GPLv3

Recipe:

/bwakit/meta.yaml

package bwakit

Versions:

0.7.17.dev1-1,  0.7.17.dev1-0,  0.7.15-3,  0.7.15-2,  0.7.15-1,  0.7.15-0,  0.7.12-0

Depends:

• bwa 0.7.17

• fermi2 r170

• htsbox r315

• k8

• perl

• ropebwt2 r187

• samblaster 0.1.20

• samtools >=1.3

• seqtk r82

• trimadap r2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bwakit

and update with:

conda update bwakit

or use the docker container:

docker pull quay.io/biocontainers/bwakit:<tag>

(see bwakit/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bwakit/README.html)