recipe bwapy

Bwapy provides python wrappers for bwa.

Homepage:

https://github.com/nanoporetech/bwapy

License:

Mozilla Public License Version 2.0

Recipe:

/bwapy/meta.yaml

package bwapy

versions:

0.1.4-10,  0.1.4-9,  0.1.4-8,  0.1.4-7,  0.1.4-5,  0.1.4-4,  0.1.4-3,  0.1.4-2,  0.1.4-1, 

0.1.4-10,  0.1.4-9,  0.1.4-8,  0.1.4-7,  0.1.4-5,  0.1.4-4,  0.1.4-3,  0.1.4-2,  0.1.4-1,  0.1.4-0

depends cffi:

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bwapy

and update with::

   mamba update bwapy

To create a new environment, run:

mamba create --name myenvname bwapy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bwapy:<tag>

(see `bwapy/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bwapy/README.html)