recipe bygul

Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input.

Homepage:

https://github.com/andersen-lab/Bygul

License:

BSD / BSD-2-Clause

Recipe:

/bygul/meta.yaml

package bygul

(downloads) docker_bygul

versions:

1.0.3-0

depends biopython:

depends click:

depends mason:

depends numpy:

depends pandas:

depends python:

>=3.8

depends tqdm:

depends wgsim:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bygul

and update with::

   mamba update bygul

To create a new environment, run:

mamba create --name myenvname bygul

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bygul:<tag>

(see `bygul/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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