recipe callingcardstools

An API and collection of cmd line tools to work with calling cards sequencing data

Homepage:

https://github.com/cmatKhan/callingCardsTools

Documentation:

https://cmatkhan.github.io/callingCardsTools/

Developer docs:

https://github.com/cmatKhan/callingCardsTools/tree/dev

License:

MIT / MIT

Recipe:

/callingcardstools/meta.yaml

package callingcardstools

(downloads) docker_callingcardstools

versions:
1.8.0-0,  1.7.2-0,  1.7.1-0,  1.6-0,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.1-1,  1.4.1-0, 

1.8.0-0,  1.7.2-0,  1.7.1-0,  1.6-0,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.1-1,  1.4.1-0,  1.4.0-0,  1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.0-1,  1.0.0-0

depends biopython:

depends numpy:

depends pandas:

depends pyranges:

>=0.0.129

depends pysam:

depends python:

>=3.8

depends python-edlib:

>=1.3.9

depends scipy:

>=1.11.4

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install callingcardstools

and update with::

   mamba update callingcardstools

To create a new environment, run:

mamba create --name myenvname callingcardstools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/callingcardstools:<tag>

(see `callingcardstools/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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