recipe calour

exploratory and interactive microbiome analyses based on heatmaps

Homepage

https://biocore.github.io/calour/

Developer docs

https://github.com/biocore/calour

License

BSD / BSD-3-Clause

Recipe

/calour/meta.yaml

Calour is a python package for processing, analysis and interactive exploration of microbiome (and other matrix form data), incorporating external databases.

package calour

Versions

2019.5.1-0, 2018.10.1-0

Depends

• biom-format

• docrep

• ipython

• ipywidgets

• matplotlib >=2.0

• numpy

• pandas

• pyqt >5

• python >=3.5

• scikit-bio >=0.5.1

• scikit-learn

• scipy

• statsmodels

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install calour

and update with:

conda update calour

or use the docker container:

docker pull quay.io/biocontainers/calour:<tag>

(see calour/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/calour/README.html)