recipe calour

exploratory and interactive microbiome analyses based on heatmaps

Homepage

https://biocore.github.io/calour/

Developer docs

https://github.com/biocore/calour

License

BSD / BSD-3-Clause

Recipe

/calour/meta.yaml

Calour is a python package for processing, analysis and interactive exploration of microbiome (and other matrix form data), incorporating external databases.

package calour

(downloads) docker_calour

Versions

2019.5.1-0, 2018.10.1-0

Depends biom-format

Depends docrep

Depends ipython

Depends ipywidgets

Depends matplotlib

>=2.0

Depends numpy

Depends pandas

Depends pyqt

>5

Depends python

>=3.5

Depends scikit-bio

>=0.5.1

Depends scikit-learn

Depends scipy

Depends statsmodels

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install calour

and update with:

conda update calour

or use the docker container:

docker pull quay.io/biocontainers/calour:<tag>

(see calour/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/calour/README.html)