recipe captus

Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Homepage:

https://github.com/edgardomortiz/Captus

License:

GPL3

Recipe:

/captus/meta.yaml

package captus

Versions:

0.9.91-0,  0.9.90-0,  0.9.89-0,  0.9.88-1,  0.9.88-0,  0.9.86-0,  0.9.85-0,  0.9.84-1,  0.9.84-0, 

0.9.91-0,  0.9.90-0,  0.9.89-0,  0.9.88-1,  0.9.88-0,  0.9.86-0,  0.9.85-0,  0.9.84-1,  0.9.84-0,  0.9.83-0

Depends:

• bbmap

• clipkit >=1.3.0

• falco >=0.3.0

• fastqc

• mafft

• megahit

• mmseqs2

• muscle >=5

• pandas

• perl-bioperl-core 1.007002.*

• pigz

• pip

• plotly

• python >=3.6

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install captus

and update with:

conda update captus

or use the docker container:

docker pull quay.io/biocontainers/captus:<tag>

(see captus/tags for valid values for <tag>)

Download stats

Link to this page

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