recipe cayman

A command-line profiling tool for profiling CAZyme abundances in metagenomic datasets.

Homepage:

https://github.com/zellerlab/cayman

License:

MIT / MIT

Recipe:

/cayman/meta.yaml

Links:

doi: 10.1101/2024.01.08.574624

package cayman

versions:

0.10.1-0

depends bwa:

depends gqlib:

>=2.14.3

depends pyhmmer:

>=0.7.0

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cayman

and update with::

   mamba update cayman

To create a new environment, run:

mamba create --name myenvname cayman

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cayman:<tag>

(see `cayman/tags`_ for valid values for ``<tag>``)

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