recipe cdna_cupcake

cDNA_Cupcake is a miscellaneous collection of Python and R scripts used for analyzing sequencing data.

Homepage

https://github.com/Magdoll/cDNA_Cupcake

License

BSD / BSD-3-Clause-Clear

Recipe

/cdna_cupcake/meta.yaml

package cdna_cupcake

Versions

28.0.0-0,  22.0.0-1,  22.0.0-0,  19.0.0-0,  18.1.0-0,  18.0.0-0,  17.0.0-0,  16.0.0-0,  15.1.0-0, 

28.0.0-0,  22.0.0-1,  22.0.0-0,  19.0.0-0,  18.1.0-0,  18.0.0-0,  17.0.0-0,  16.0.0-0,  15.1.0-0,  14.2.0-0,  14.0.0-0,  13.0.0-0,  12.5-0,  12.4.0-1,  12.4.0-0,  12.3.0-0,  12.1.0-1,  12.1.0-0,  12.0.0-0,  11.0.0-0,  10.0.1-0,  9.1.1-0,  9.0.3-0,  8.7.3-0,  5.8-0,  5.3-1,  5.3-0

Depends

• bcbio-gff

• biopython

• bx-python >=0.7.3

• graphviz

• libgcc-ng >=9.4.0

• numpy >=1.17.5,<2.0a0

• pysam

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• r-base

• samtools >=1.10

• scikit-learn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cdna_cupcake

and update with:

conda update cdna_cupcake

or use the docker container:

docker pull quay.io/biocontainers/cdna_cupcake:<tag>

(see cdna_cupcake/tags for valid values for <tag>)

Download stats

Link to this page

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