recipe cdskit

A toolkit for processing protein-coding sequences (CDS).

Homepage:

https://github.com/kfuku52/cdskit

License:

BSD-3-Clause

Recipe:

/cdskit/meta.yaml

CDSKIT is a Python program that processes DNA sequences, especially protein-coding sequences. Many functions of this program are designed to handle DNA sequences using codons (sets of three nucleotides) as the unit, and therefore, edits the coding sequences without causing a frameshift. All sequence formats supported by Biopython are available in this tool for both inputs and outputs.

package cdskit

(downloads) docker_cdskit

versions:

0.14.4-0,  0.14.3-0,  0.14.2-0,  0.14.1-0

depends biopython:

depends numpy:

depends python:

>=3.9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cdskit

and update with::

   mamba update cdskit

To create a new environment, run:

mamba create --name myenvname cdskit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cdskit:<tag>

(see `cdskit/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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