recipe cell-types-analysis

A suite of scripts for analysis of scRNA-seq cell type classification tools outputs.

Homepage:

https://github.com/ebi-gene-expression-group/cell-types-analysis

License:

MIT

Recipe:

/cell-types-analysis/meta.yaml

package cell-types-analysis

Versions:

0.1.11-1,  0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0, 

0.1.11-1,  0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.2-1,  0.1.2-0,  0.1.1-0,  0.1.0-0,  0.0.10-0,  0.0.9-0,  0.0.8-0

Depends:

• bats

• bioconductor-dropletutils

• bioconductor-onassis

• openjdk 8.0.152.*

• r-data.table 1.12.8.*

• r-doparallel

• r-foreach

• r-hash 2.2.6.1.*

• r-matrixstats

• r-optparse

• r-reshape2 1.4.3.*

• r-stringi

• r-workflowscriptscommon

• r-yaml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cell-types-analysis

and update with:

conda update cell-types-analysis

or use the docker container:

docker pull quay.io/biocontainers/cell-types-analysis:<tag>

(see cell-types-analysis/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cell-types-analysis/README.html)