recipe celltypist

A tool for semi-automatic cell type annotation

Homepage:

https://github.com/Teichlab/celltypist

License:

MIT / MIT

Recipe:

/celltypist/meta.yaml

package celltypist

Versions:

1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.0-0,  0.2.1-0,  0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-0, 

1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.0-0,  0.2.1-0,  0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-1,  0.1.3-0

Depends:

• click >=7.1.2

• leidenalg >=0.8.3

• numpy <=1.21.0

• openpyxl >=3.0.4

• pandas >=1.0.5

• python >=3.6

• requests >=2.23.0

• scanpy >=1.7.0

• scikit-learn >=0.24.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install celltypist

and update with:

conda update celltypist

or use the docker container:

docker pull quay.io/biocontainers/celltypist:<tag>

(see celltypist/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/celltypist/README.html)