recipe centroid_rna_package

Collection of RNA secondary structure prediction programs based on gamma-centroid estimator (Hamada et. al. 2009)

Homepage:

https://github.com/satoken/centroid-rna-package

License:

GPL-V2

Recipe:

/centroid_rna_package/meta.yaml

Links:

doi: 10.1093/bioinformatics/btn601, doi: 10.1093/bioinformatics/btp228, doi: 10.1093/nar/gkq792

package centroid_rna_package

(downloads) docker_centroid_rna_package

versions:

0.0.16-1,  0.0.16-0,  0.0.15-0

depends viennarna:

>=1.8

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install centroid_rna_package

and update with::

   mamba update centroid_rna_package

To create a new environment, run:

mamba create --name myenvname centroid_rna_package

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/centroid_rna_package:<tag>

(see `centroid_rna_package/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/centroid_rna_package/README.html)