- recipe chexalign
ChExAlign is used for alignment and quantification of ChIP-exo crosslinking patterns.
- Homepage:
- License:
MIT
- Recipe:
ChExAlign is a computational framework that aligns ChIP-exo crosslinking patterns from multiple proteins across a set of regulatory regions, and which detects and quantifies protein-DNA crosslinking events within the aligned profiles. The output of the alignment approach is a set of composite profiles that represent the crosslinking signatures of the complex across analyzed regulatory regions. We then use a probabilistic mixture model to deconvolve individual crosslinking events within the aligned ChIP-exo profiles, enabling consistent measurements of protein-DNA crosslinking strengths across multiple proteins.
- package chexalign¶
-
- Versions:
0.12-1
,0.12-0
,0.11-0
- Depends:
openjdk
>=8
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install chexalign
and update with:
conda update chexalign
or use the docker container:
docker pull quay.io/biocontainers/chexalign:<tag>
(see chexalign/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/chexalign/README.html)