recipe chexalign

ChExAlign is used for alignment and quantification of ChIP-exo crosslinking patterns.

Homepage

https://github.com/seqcode/chexalign

License

MIT

Recipe

/chexalign/meta.yaml

ChExAlign is a computational framework that aligns ChIP-exo crosslinking patterns from multiple proteins across a set of regulatory regions, and which detects and quantifies protein-DNA crosslinking events within the aligned profiles. The output of the alignment approach is a set of composite profiles that represent the crosslinking signatures of the complex across analyzed regulatory regions. We then use a probabilistic mixture model to deconvolve individual crosslinking events within the aligned ChIP-exo profiles, enabling consistent measurements of protein-DNA crosslinking strengths across multiple proteins.

package chexalign

Versions

0.12-0,  0.11-0

Depends

• openjdk >=8

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install chexalign

and update with:

conda update chexalign

or use the docker container:

docker pull quay.io/biocontainers/chexalign:<tag>

(see chexalign/tags for valid values for <tag>)

Link to this page

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