recipe chiron

A deep neural network basecaller for nanopore sequencing.

Homepage:

https://github.com/haotianteng/chiron

License:

OTHER / Mozilla Public License 2.0 (MPL 2.0)

Recipe:

/chiron/meta.yaml

Links:

doi: 10.1093/gigascience/giy037, biotools: Chiron

package chiron

Versions:

0.6.1.1-0,  0.6.1-0,  0.4.2.1-1,  0.4.2.1-0

Depends:

• h5py >=2.7.0

• mappy >=2.10.0

• numpy >=1.13.3

• python 2.7.*

• statsmodels >=0.8.0

• tensorflow >=1.3.0

• tqdm >=4.23.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install chiron

and update with:

conda update chiron

or use the docker container:

docker pull quay.io/biocontainers/chiron:<tag>

(see chiron/tags for valid values for <tag>)

Notes

conda-forge::tensorflow requires GLIBC >=2.16. It should be present on most, but not all systems. See https://github.com/conda-forge/tensorflow-feedstock/issues/67

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