- recipe chisel
Copy-number Haplotype Inference in Single-cell by Evolutionary Links
- Homepage:
- License:
BSD-3
- Recipe:
CHISEL is an algorithm to infer allele- and haplotype-specififc copy numbers in individual cells from low-coverage single-cell DNA sequencing data. Specifically, the current implementation of CHISEL has been designed to be diretly applied to ultra-low coverage single-cell DNA sequencing data from 10X Genomics CNV solution, however CHISEL will be adapted to the data generated by any other available technology (e.g. DLP+).
- package chisel¶
-
- Versions:
1.1.4-0
,1.1.3-0
,1.1.2-0
,1.1.1-0
,1.1-0
,1.0.0-0
,0.0.5-0
,0.0.4-0
,0.0.2-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install chisel
and update with:
conda update chisel
or use the docker container:
docker pull quay.io/biocontainers/chisel:<tag>
(see chisel/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/chisel/README.html)