recipe chromhmm

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks.

Homepage

https://github.com/jernst98/ChromHMM

License

GPLv3

Recipe

/chromhmm/meta.yaml

Links

biotools: chromhmm

package chromhmm

(downloads) docker_chromhmm

Versions

1.21-01.20-11.20-01.19-01.15-01.14-01.12-01.11-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install chromhmm

and update with:

conda update chromhmm

or use the docker container:

docker pull quay.io/biocontainers/chromhmm:<tag>

(see chromhmm/tags for valid values for <tag>)

Notes

ChromHMM comes with about 36MB of example data which is not included in the recipe. This recipe installs a script, "download_chromhmm_data.sh", which downloads the data in the proper location, and which can be run after ChromHMM has been installed.