recipe cifi

CiFi - toolkit for downstream processing of CiFi long reads

Homepage:

https://github.com/mr-eyes/cifi-toolkit

License:

MIT / MIT

Recipe:

/cifi/meta.yaml

package cifi

(downloads) docker_cifi

versions:

0.2.3-0

depends click:

>=8.0

depends htslib:

>=1.23,<1.24.0a0

depends jinja2:

>=3.0

depends libgcc:

>=14

depends libstdcxx:

>=14

depends libzlib:

>=1.3.1,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cifi

and update with::

   mamba update cifi

To create a new environment, run:

mamba create --name myenvname cifi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cifi:<tag>

(see `cifi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cifi/README.html)